This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by GROMACS configure 3.3.2, which was
generated by GNU Autoconf 2.61. Invocation command line was
$ ./configure --prefix=/scratch/cneale/exe/gromacs-3.3.2/exec
--enable-mpi --program-suffix=_mpi --disable-nice
## --------- ##
## Platform. ##
## --------- ##
hostname = gw3.greatwhite.sharcnet
uname -m = alpha
uname -r = 2.4.21-3.7qsnet
uname -s = Linux
uname -v = #1 SMP Thu Feb 16 07:40:10 EST 2006
/usr/bin/uname -p = unknown
/bin/uname -X = unknown
/bin/arch = alpha
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /opt/sharcnet/compile/bin
PATH: /opt/lsf/6.0/rms2.82_linux2.4-glibc2.2-alpha/bin
PATH: /opt/lsf/6.0/rms2.82_linux2.4-glibc2.2-alpha/etc
PATH: /share/bin
PATH: /usr/java/jdk1.3.1/bin
PATH: /usr/local/bin
PATH: /usr/bin
PATH: /bin
PATH: /usr/sbin
PATH: /sbin
PATH: /usr/X11R6/bin
PATH: /opt/sharcnet/sq/bin
PATH: /home/cneale/bin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:2071: checking build system type
configure:2089: result: alphaev6-unknown-linux-gnu
configure:2111: checking host system type
configure:2126: result: alphaev6-unknown-linux-gnu
configure:2164: checking for a BSD-compatible install
configure:2220: result: /usr/bin/install -c
configure:2231: checking whether build environment is sane
configure:2274: result: yes
configure:2302: checking for a thread-safe mkdir -p
configure:2341: result: /bin/mkdir -p
configure:2354: checking for gawk
configure:2381: result: gawk
configure:2392: checking whether make sets $(MAKE)
configure:2413: result: yes
configure:2596: checking how to create a ustar tar archive
configure:2609: tar --version
tar (GNU tar) 1.13.25
Copyright (C) 2001 Free Software Foundation, Inc.
This program comes with NO WARRANTY, to the extent permitted by law.
You may redistribute it under the terms of the GNU General Public License;
see the file named COPYING for details.
Written by John Gilmore and Jay Fenlason.
configure:2612: $? = 0
configure:2652: tardir=conftest.dir && eval tar --format=ustar -chf -
"$tardir" >conftest.tar
tar: unrecognized option `--format=ustar'
Try `tar --help' for more information.
configure:2655: $? = 2
configure:2652: tardir=conftest.dir && eval pax -L -x ustar -w
"$tardir" >conftest.tar
configure:2655: $? = 0
configure:2659: pax -r &5
ccc: Error: No source or object files specified on the command line
configure:3274: $? = 1
configure:3281: ccc -v >&5
comp.config contains:
-SD/usr/lib/compaq/ccc-6.5.6.002-1/alpha-linux/include
-SD/usr/local/include
-SD/usr/lib/gcc-lib/alpha-redhat-linux/2.96/include -SD/usr/include |
-SysIncDir /usr/lib/compaq/ccc-6.5.6.002-1/alpha-linux/include
-SysIncDir /usr/local/include -SysIncDir
/usr/lib/gcc-lib/alpha-redhat-linux/2.96/include -SysIncDir
/usr/include -L/usr/lib/compaq/ccc-6.5.6.002-1/alpha-linux/lib
-L/usr/lib/gcc-lib/alpha-redhat-linux/2.96
-L/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../..
ccc: Error: No source or object files specified on the command line
configure:3284: $? = 1
configure:3291: ccc -V >&5
Compaq C T6.5-002 on Linux 2.4.21-3.7qsnet alpha
Installed as ccc-6.5.6.002-1
Red Hat Linux release 7.2 (Enigma)
Using /usr/lib/gcc-lib/alpha-redhat-linux/2.96 (4).
Compiler Driver T6.5-001 (Linux) cc Driver
configure:3294: $? = 0
configure:3317: checking for C compiler default output file name
configure:3344: ccc -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c >&5
configure:3347: $? = 0
configure:3385: result: a.out
configure:3402: checking whether the C compiler works
configure:3412: ./a.out
configure:3415: $? = 0
configure:3432: result: yes
configure:3439: checking whether we are cross compiling
configure:3441: result: no
configure:3444: checking for suffix of executables
configure:3451: ccc -o conftest
-I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c >&5
configure:3454: $? = 0
configure:3478: result:
configure:3484: checking for suffix of object files
configure:3510: ccc -c -I/home/cneale/exe/fftw-3.1.2/exec/include
conftest.c >&5
configure:3513: $? = 0
configure:3536: result: o
configure:3540: checking whether we are using the GNU C compiler
configure:3569: ccc -c -I/home/cneale/exe/fftw-3.1.2/exec/include
conftest.c >&5
cc: Error: conftest.c, line 21: In this declaration, "choke" must
specify a type. (badparsedecl)
choke me
-------^
configure:3575: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.2"
| #define PACKAGE_STRING "GROMACS 3.3.2"
| #define PACKAGE_BUGREPORT "gmx-users@gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.2"
| #define GMX_FORTRAN
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Nov 14 12:45:13 EST 2007"
| #define BUILD_USER "cneale@gw3.greatwhite.sharcnet"
| #define BUILD_MACHINE "Linux 2.4.21-3.7qsnet alpha"
| /* end confdefs.h. */
|
| int
| main ()
| {
| #ifndef __GNUC__
| choke me
| #endif
|
| ;
| return 0;
| }
configure:3592: result: no
configure:3597: checking whether ccc accepts -g
configure:3627: ccc -c -g -I/home/cneale/exe/fftw-3.1.2/exec/include
conftest.c >&5
configure:3633: $? = 0
configure:3732: result: yes
configure:3749: checking for ccc option to accept ISO C89
configure:3823: ccc -c -g -I/home/cneale/exe/fftw-3.1.2/exec/include
conftest.c >&5
configure:3829: $? = 0
configure:3852: result: none needed
configure:3881: checking for style of include used by make
configure:3909: result: GNU
configure:3934: checking dependency style of ccc
configure:4025: result: none
configure:4100: checking for fort
configure:4116: found /usr/bin/fort
configure:4127: result: fort
configure:4157: checking for Fortran 77 compiler version
configure:4164: fort --version >&5
2.96
configure:4167: $? = 0
configure:4174: fort -v >&5
/usr/bin/cc -v /usr/lib/compaq/cfal/for_main.o -O3 -lUfor -lfor
-lFutil -lcpml -lots
Reading specs from /usr/lib/gcc-lib/alpha-redhat-linux/2.96/specs
gcc version 2.96 20000731 (Red Hat Linux 7.2 2.96-112.7.1)
/usr/lib/gcc-lib/alpha-redhat-linux/2.96/collect2 -m elf64alpha -O3
-dynamic-linker /lib/ld-linux.so.2
/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../../crt1.o
/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../../crti.o
/usr/lib/gcc-lib/alpha-redhat-linux/2.96/crtbegin.o
-L/usr/lib/gcc-lib/alpha-redhat-linux/2.96
-L/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../..
/usr/lib/compaq/cfal/for_main.o -lUfor -lfor -lFutil -lcpml -lots
-lgcc -lc -lgcc /usr/lib/gcc-lib/alpha-redhat-linux/2.96/crtend.o
/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../../crtn.o
/usr/lib/compaq/cfal/for_main.o: In function `main':
/usr/lib/compaq/cfal/for_main.o(.text+0x30): undefined reference to `MAIN__'
/usr/lib/compaq/cfal/for_main.o(.text+0x34): undefined reference to `MAIN__'
/usr/lib/compaq/cfal/for_main.o(.text+0x34): undefined reference to `MAIN__'
collect2: ld returned 1 exit status
fort: Severe: Failed while trying to link.
configure:4177: $? = 1
configure:4184: fort -V >&5
/usr/lib/compaq/cfal/for_main.o: In function `main':
/usr/lib/compaq/cfal/for_main.o(.text+0x30): undefined reference to `MAIN__'
/usr/lib/compaq/cfal/for_main.o(.text+0x34): undefined reference to `MAIN__'
/usr/lib/compaq/cfal/for_main.o(.text+0x34): undefined reference to `MAIN__'
collect2: ld returned 1 exit status
fort: Severe: Failed while trying to link.
configure:4187: $? = 1
configure:4195: checking whether we are using the GNU Fortran 77 compiler
configure:4214: fort -c conftest.F >&5
f90: Error: conftest.F, line 3: Syntax error, found END-OF-STATEMENT
when expecting one of: ( : % . = =>
choke me
---------------^
f90: Error: conftest.F, line 3: This statement is positioned
incorrectly and/or has syntax errors.
choke me
---------------^
configure:4220: $? = 1
configure: failed program was:
| program main
| #ifndef __GNUC__
| choke me
| #endif
|
| end
configure:4237: result: no
configure:4243: checking whether fort accepts -g
configure:4260: fort -c -g conftest.f >&5
configure:4266: $? = 0
configure:4282: result: yes
configure:4323: checking dependency style of ccc
configure:4414: result: none
configure:4439: checking for mpxlc
configure:4469: result: no
configure:4439: checking for mpicc
configure:4455: found /opt/sharcnet/compile/bin/mpicc
configure:4466: result: mpicc
configure:4480: checking whether the MPI cc command works
configure:4504: mpicc -o conftest -g
-I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c >&5
configure:4510: $? = 0
configure:4516: result: yes
configure:4564: checking how to get verbose linking output from fort
configure:4580: fort -c -g conftest.f >&5
configure:4586: $? = 0
configure:4608: fort -o conftest -g -v
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.f
/usr/lib/compaq/cfal/decfort90 -g -O0 -o /tmp/forbFK24q.o conftest.f
/usr/bin/cc -o conftest -g2 -v -L/home/cneale/exe/fftw-3.1.2/exec/lib
/usr/lib/compaq/cfal/for_main.o /tmp/forbFK24q.o -O0 -lUfor -lfor
-lFutil -lcpml -lots
Reading specs from /usr/lib/gcc-lib/alpha-redhat-linux/2.96/specs
gcc version 2.96 20000731 (Red Hat Linux 7.2 2.96-112.7.1)
/usr/lib/gcc-lib/alpha-redhat-linux/2.96/collect2 -m elf64alpha -O3
-dynamic-linker /lib/ld-linux.so.2 -o conftest
/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../../crt1.o
/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../../crti.o
/usr/lib/gcc-lib/alpha-redhat-linux/2.96/crtbegin.o
-L/home/cneale/exe/fftw-3.1.2/exec/lib
-L/usr/lib/gcc-lib/alpha-redhat-linux/2.96
-L/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../..
/usr/lib/compaq/cfal/for_main.o /tmp/forbFK24q.o -lUfor -lfor -lFutil
-lcpml -lots -lgcc -lc -lgcc
/usr/lib/gcc-lib/alpha-redhat-linux/2.96/crtend.o
/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../../crtn.o
configure:4674: result: -v
configure:4676: checking for Fortran 77 libraries of fort
configure:4699: fort -o conftest -g -v
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.f
/usr/lib/compaq/cfal/decfort90 -g -O0 -o /tmp/forapmO6I.o conftest.f
/usr/bin/cc -o conftest -g2 -v -L/home/cneale/exe/fftw-3.1.2/exec/lib
/usr/lib/compaq/cfal/for_main.o /tmp/forapmO6I.o -O0 -lUfor -lfor
-lFutil -lcpml -lots
Reading specs from /usr/lib/gcc-lib/alpha-redhat-linux/2.96/specs
gcc version 2.96 20000731 (Red Hat Linux 7.2 2.96-112.7.1)
/usr/lib/gcc-lib/alpha-redhat-linux/2.96/collect2 -m elf64alpha -O3
-dynamic-linker /lib/ld-linux.so.2 -o conftest
/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../../crt1.o
/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../../crti.o
/usr/lib/gcc-lib/alpha-redhat-linux/2.96/crtbegin.o
-L/home/cneale/exe/fftw-3.1.2/exec/lib
-L/usr/lib/gcc-lib/alpha-redhat-linux/2.96
-L/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../..
/usr/lib/compaq/cfal/for_main.o /tmp/forapmO6I.o -lUfor -lfor -lFutil
-lcpml -lots -lgcc -lc -lgcc
/usr/lib/gcc-lib/alpha-redhat-linux/2.96/crtend.o
/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../../crtn.o
configure:4873: result: -L/home/cneale/exe/fftw-3.1.2/exec/lib -lUfor
-lfor -lFutil -lcpml -lots -L/usr/lib/gcc-lib/alpha-redhat-linux/2.96
-L/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../..
configure:4889: checking for dummy main to link with Fortran 77 libraries
configure:4933: mpicc -o conftest -g
-I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c
-L/home/cneale/exe/fftw-3.1.2/exec/lib -lUfor -lfor -lFutil -lcpml
-lots -L/usr/lib/gcc-lib/alpha-redhat-linux/2.96
-L/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../.. >&5
configure:4939: $? = 0
configure:5020: result: none
configure:5057: checking for Fortran 77 name-mangling scheme
configure:5076: fort -c -g conftest.f >&5
configure:5082: $? = 0
configure:5137: mpicc -o conftest -g
-I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c cfortran_test.o
-L/home/cneale/exe/fftw-3.1.2/exec/lib -lUfor -lfor -lFutil -lcpml
-lots -L/usr/lib/gcc-lib/alpha-redhat-linux/2.96
-L/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../.. >&5
conftest.o: In function `main':
:36: undefined reference to `foobar'
:36: undefined reference to `foobar'
:36: undefined reference to `foobar'
collect2: ld returned 1 exit status
configure:5143: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.2"
| #define PACKAGE_STRING "GROMACS 3.3.2"
| #define PACKAGE_BUGREPORT "gmx-users@gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.2"
| #define GMX_FORTRAN
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Nov 14 12:45:13 EST 2007"
| #define BUILD_USER "cneale@gw3.greatwhite.sharcnet"
| #define BUILD_MACHINE "Linux 2.4.21-3.7qsnet alpha"
| #define GMX_MPI
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char foobar ();
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| int
| main ()
| {
| return foobar ();
| ;
| return 0;
| }
configure:5137: mpicc -o conftest -g
-I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c cfortran_test.o
-L/home/cneale/exe/fftw-3.1.2/exec/lib -lUfor -lfor -lFutil -lcpml
-lots -L/usr/lib/gcc-lib/alpha-redhat-linux/2.96
-L/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../.. >&5
configure:5143: $? = 0
configure:5222: mpicc -o conftest -g
-I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c cfortran_test.o
-L/home/cneale/exe/fftw-3.1.2/exec/lib -lUfor -lfor -lFutil -lcpml
-lots -L/usr/lib/gcc-lib/alpha-redhat-linux/2.96
-L/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../.. >&5
conftest.o: In function `main':
:36: undefined reference to `foo_bar_'
:36: undefined reference to `foo_bar_'
:36: undefined reference to `foo_bar_'
collect2: ld returned 1 exit status
configure:5228: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.2"
| #define PACKAGE_STRING "GROMACS 3.3.2"
| #define PACKAGE_BUGREPORT "gmx-users@gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.2"
| #define GMX_FORTRAN
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Nov 14 12:45:13 EST 2007"
| #define BUILD_USER "cneale@gw3.greatwhite.sharcnet"
| #define BUILD_MACHINE "Linux 2.4.21-3.7qsnet alpha"
| #define GMX_MPI
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char foo_bar_ ();
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| int
| main ()
| {
| return foo_bar_ ();
| ;
| return 0;
| }
configure:5222: mpicc -o conftest -g
-I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c cfortran_test.o
-L/home/cneale/exe/fftw-3.1.2/exec/lib -lUfor -lfor -lFutil -lcpml
-lots -L/usr/lib/gcc-lib/alpha-redhat-linux/2.96
-L/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../.. >&5
configure:5228: $? = 0
configure:5285: result: lower case, underscore, extra underscore
configure:5411: checking how to run the C preprocessor
configure:5451: mpicc -E -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c
configure:5457: $? = 0
configure:5488: mpicc -E -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c
cc: Error: conftest.c, line 21: Cannot find file
specified in #include directive. (noinclfile)
#include
-^
configure:5494: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.2"
| #define PACKAGE_STRING "GROMACS 3.3.2"
| #define PACKAGE_BUGREPORT "gmx-users@gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.2"
| #define GMX_FORTRAN
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Nov 14 12:45:13 EST 2007"
| #define BUILD_USER "cneale@gw3.greatwhite.sharcnet"
| #define BUILD_MACHINE "Linux 2.4.21-3.7qsnet alpha"
| #define GMX_MPI
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## __
| #define F77_OR_C_FUNC(name,NAME) F77_FUNC(name,NAME)
| #define F77_OR_C_FUNC_(name,NAME) F77_FUNC_(name,NAME)
| /* end confdefs.h. */
| #include
configure:5527: result: mpicc -E
configure:5556: mpicc -E -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c
configure:5562: $? = 0
configure:5593: mpicc -E -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c
cc: Error: conftest.c, line 21: Cannot find file
specified in #include directive. (noinclfile)
#include
-^
configure:5599: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.2"
| #define PACKAGE_STRING "GROMACS 3.3.2"
| #define PACKAGE_BUGREPORT "gmx-users@gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.2"
| #define GMX_FORTRAN
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Nov 14 12:45:13 EST 2007"
| #define BUILD_USER "cneale@gw3.greatwhite.sharcnet"
| #define BUILD_MACHINE "Linux 2.4.21-3.7qsnet alpha"
| #define GMX_MPI
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## __
| #define F77_OR_C_FUNC(name,NAME) F77_FUNC(name,NAME)
| #define F77_OR_C_FUNC_(name,NAME) F77_FUNC_(name,NAME)
| /* end confdefs.h. */
| #include
configure:6410: checking whether mpicc accepts -std1 -fast -O4 -no_ifo
-arch ev6 -unroll 2 -fp_reorder
configure:6428: result: yes
configure:6463: checking whether fort accepts -std1 -fast -O4 -no_ifo
-arch ev6 -unroll 2 -fp_reorder -assume noaccuracy_sensitive
configure:6481: result: yes
configure:6520: checking for grep that handles long lines and -e
configure:6594: result: /bin/grep
configure:6599: checking for egrep
configure:6677: result: /bin/grep -E
configure:6682: checking for ANSI C header files
configure:6720: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:6726: $? = 0
configure:6822: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c >&5
configure:6825: $? = 0
configure:6831: ./conftest
configure:6834: $? = 0
configure:6851: result: yes
configure:6875: checking for sys/types.h
configure:6896: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:6902: $? = 0
configure:6918: result: yes
configure:6875: checking for sys/stat.h
configure:6896: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:6902: $? = 0
configure:6918: result: yes
configure:6875: checking for stdlib.h
configure:6896: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:6902: $? = 0
configure:6918: result: yes
configure:6875: checking for string.h
configure:6896: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:6902: $? = 0
configure:6918: result: yes
configure:6875: checking for memory.h
configure:6896: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:6902: $? = 0
configure:6918: result: yes
configure:6875: checking for strings.h
configure:6896: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:6902: $? = 0
configure:6918: result: yes
configure:6875: checking for inttypes.h
configure:6896: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:6902: $? = 0
configure:6918: result: yes
configure:6875: checking for stdint.h
configure:6896: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:6902: $? = 0
configure:6918: result: yes
configure:6875: checking for unistd.h
configure:6896: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:6902: $? = 0
configure:6918: result: yes
configure:6930: checking whether byte ordering is bigendian
configure:6970: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:6976: $? = 0
configure:7016: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
cc: Error: conftest.c, line 46: In this declaration, "not" must
specify a type. (badparsedecl)
not big endian
-^
configure:7022: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.2"
| #define PACKAGE_STRING "GROMACS 3.3.2"
| #define PACKAGE_BUGREPORT "gmx-users@gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.2"
| #define GMX_FORTRAN
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Nov 14 12:45:13 EST 2007"
| #define BUILD_USER "cneale@gw3.greatwhite.sharcnet"
| #define BUILD_MACHINE "Linux 2.4.21-3.7qsnet alpha"
| #define GMX_MPI
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## __
| #define F77_OR_C_FUNC(name,NAME) F77_FUNC(name,NAME)
| #define F77_OR_C_FUNC_(name,NAME) F77_FUNC_(name,NAME)
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h. */
| #include
| #include
|
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| int
| main ()
| {
| #if BYTE_ORDER != BIG_ENDIAN
| not big endian
| #endif
|
| ;
| return 0;
| }
configure:7178: result: no
configure:7201: checking for int
configure:7239: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:7245: $? = 0
configure:7260: result: yes
configure:7267: checking size of int
configure:7617: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c >&5
configure:7620: $? = 0
configure:7626: ./conftest
configure:7629: $? = 0
configure:7652: result: 4
configure:7662: checking for long int
configure:7700: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:7706: $? = 0
configure:7721: result: yes
configure:7728: checking size of long int
configure:8078: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c >&5
configure:8081: $? = 0
configure:8087: ./conftest
configure:8090: $? = 0
configure:8113: result: 8
configure:8123: checking for long long int
configure:8161: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
cc: Info: conftest.c, line 66: In this declaration, type "long long"
is a new feature in C99. (longlongtype)
typedef long long int ac__type_new_;
--------^
configure:8167: $? = 0
configure:8182: result: yes
configure:8189: checking size of long long int
configure:8539: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c >&5
cc: Info: conftest.c, line 66: In this declaration, type "long long"
is a new feature in C99. (longlongtype)
typedef long long int ac__type_sizeof_;
-----------^
configure:8542: $? = 0
configure:8548: ./conftest
configure:8551: $? = 0
configure:8574: result: 8
configure:8589: checking floating-point format
configure:8610: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:8613: $? = 0
configure:8643: result: IEEE754 (little-endian byte and word order)
configure:8721: checking for a BSD-compatible install
configure:8777: result: /usr/bin/install -c
configure:8788: checking whether ln -s works
configure:8792: result: yes
configure:8799: checking whether make sets $(MAKE)
configure:8820: result: yes
configure:8879: checking for a sed that does not truncate output
configure:8933: result: /bin/sed
configure:8980: checking for non-GNU ld
configure:9014: result: /usr/bin/ld
configure:9023: checking if the linker (/usr/bin/ld) is GNU ld
configure:9038: result: yes
configure:9043: checking for /usr/bin/ld option to reload object files
configure:9050: result: -r
configure:9068: checking for BSD-compatible nm
configure:9117: result: /usr/bin/nm -B
configure:9121: checking how to recognise dependent libraries
configure:9297: result: pass_all
configure:9838: checking dlfcn.h usability
configure:9855: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:9861: $? = 0
configure:9875: result: yes
configure:9879: checking dlfcn.h presence
configure:9894: mpicc -E -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c
configure:9900: $? = 0
configure:9914: result: yes
configure:9947: checking for dlfcn.h
configure:9955: result: yes
configure:10026: checking for g++
configure:10042: found /usr/bin/g++
configure:10053: result: g++
configure:10084: checking for C++ compiler version
configure:10091: g++ --version >&5
2.96
configure:10094: $? = 0
configure:10101: g++ -v >&5
Reading specs from /usr/lib/gcc-lib/alpha-redhat-linux/2.96/specs
gcc version 2.96 20000731 (Red Hat Linux 7.2 2.96-112.7.1)
configure:10104: $? = 0
configure:10111: g++ -V >&5
g++: argument to `-V' missing
configure:10114: $? = 1
configure:10117: checking whether we are using the GNU C++ compiler
configure:10154: g++ -c -I/home/cneale/exe/fftw-3.1.2/exec/include
conftest.cpp >&5
configure:10160: $? = 0
configure:10177: result: yes
configure:10182: checking whether g++ accepts -g
configure:10220: g++ -c -g -I/home/cneale/exe/fftw-3.1.2/exec/include
conftest.cpp >&5
configure:10226: $? = 0
configure:10341: result: yes
configure:10366: checking dependency style of g++
configure:10457: result: gcc
configure:10482: checking how to run the C++ preprocessor
configure:10518: g++ -E -I/home/cneale/exe/fftw-3.1.2/exec/include
conftest.cpp
configure:10524: $? = 0
configure:10555: g++ -E -I/home/cneale/exe/fftw-3.1.2/exec/include
conftest.cpp
conftest.cpp:36:28: ac_nonexistent.h: No such file or directory
configure:10561: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.2"
| #define PACKAGE_STRING "GROMACS 3.3.2"
| #define PACKAGE_BUGREPORT "gmx-users@gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.2"
| #define GMX_FORTRAN
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Nov 14 12:45:13 EST 2007"
| #define BUILD_USER "cneale@gw3.greatwhite.sharcnet"
| #define BUILD_MACHINE "Linux 2.4.21-3.7qsnet alpha"
| #define GMX_MPI
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## __
| #define F77_OR_C_FUNC(name,NAME) F77_FUNC(name,NAME)
| #define F77_OR_C_FUNC_(name,NAME) F77_FUNC_(name,NAME)
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define SIZEOF_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_LONG_LONG_INT 8
| #define FLOAT_FORMAT_IEEE754
| #define HAVE_DLFCN_H 1
| /* end confdefs.h. */
| #include
configure:10594: result: g++ -E
configure:10623: g++ -E -I/home/cneale/exe/fftw-3.1.2/exec/include
conftest.cpp
configure:10629: $? = 0
configure:10660: g++ -E -I/home/cneale/exe/fftw-3.1.2/exec/include
conftest.cpp
conftest.cpp:36:28: ac_nonexistent.h: No such file or directory
configure:10666: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.2"
| #define PACKAGE_STRING "GROMACS 3.3.2"
| #define PACKAGE_BUGREPORT "gmx-users@gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.2"
| #define GMX_FORTRAN
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Nov 14 12:45:13 EST 2007"
| #define BUILD_USER "cneale@gw3.greatwhite.sharcnet"
| #define BUILD_MACHINE "Linux 2.4.21-3.7qsnet alpha"
| #define GMX_MPI
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## __
| #define F77_OR_C_FUNC(name,NAME) F77_FUNC(name,NAME)
| #define F77_OR_C_FUNC_(name,NAME) F77_FUNC_(name,NAME)
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define SIZEOF_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_LONG_LONG_INT 8
| #define FLOAT_FORMAT_IEEE754
| #define HAVE_DLFCN_H 1
| /* end confdefs.h. */
| #include
configure:10710: checking the maximum length of command line arguments
configure:10819: result: 65536
configure:10830: checking command to parse /usr/bin/nm -B output from
mpicc object
configure:10935: g++ -c -g -O2
-I/home/cneale/exe/fftw-3.1.2/exec/include conftest.cpp >&5
configure:10938: $? = 0
configure:10942: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[
]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1
\2 \2/p' \> conftest.nm
configure:10945: $? = 0
configure:10997: g++ -o conftest -g -O2
-I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.cpp conftstm.o >&5
configure:11000: $? = 0
configure:11038: result: ok
configure:11042: checking for objdir
configure:11057: result: .libs
configure:11149: checking for ar
configure:11165: found /usr/bin/ar
configure:11176: result: ar
configure:11245: checking for ranlib
configure:11261: found /usr/bin/ranlib
configure:11272: result: ranlib
configure:11341: checking for strip
configure:11357: found /usr/bin/strip
configure:11368: result: strip
configure:11704: checking for mpicc option to produce PIC
configure:11914: result:
configure:11985: checking if mpicc static flag works
configure:12013: result: yes
configure:12023: checking if mpicc supports -c -o file.o
configure:12048: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include -o
out/conftest2.o conftest.c >&5
configure:12052: $? = 0
configure:12070: result: yes
configure:12096: checking whether the mpicc linker (/usr/bin/ld)
supports shared libraries
configure:13076: result: yes
configure:13143: checking dynamic linker characteristics
configure:13743: result: GNU/Linux ld.so
configure:13752: checking how to hardcode library paths into programs
configure:13777: result: immediate
configure:13791: checking whether stripping libraries is possible
configure:13796: result: yes
configure:14653: checking if libtool supports shared libraries
configure:14655: result: yes
configure:14658: checking whether to build shared libraries
configure:14679: result: no
configure:14682: checking whether to build static libraries
configure:14686: result: yes
configure:14778: creating libtool
configure:15366: checking for ld used by g++
configure:15433: result: /usr/bin/ld
configure:15442: checking if the linker (/usr/bin/ld) is GNU ld
configure:15457: result: yes
configure:15508: checking whether the g++ linker (/usr/bin/ld)
supports shared libraries
configure:16458: result: yes
configure:16476: g++ -c -g -O2
-I/home/cneale/exe/fftw-3.1.2/exec/include conftest.cpp >&5
configure:16479: $? = 0
configure:16598: checking for g++ option to produce PIC
configure:16872: result: -fPIC
configure:16880: checking if g++ PIC flag -fPIC works
configure:16902: g++ -c -g -O2
-I/home/cneale/exe/fftw-3.1.2/exec/include -fPIC -DPIC conftest.cpp >&5
configure:16906: $? = 0
configure:16915: result: yes
configure:16943: checking if g++ static flag -static works
configure:16971: result: yes
configure:16981: checking if g++ supports -c -o file.o
configure:17006: g++ -c -g -O2
-I/home/cneale/exe/fftw-3.1.2/exec/include -o out/conftest2.o
conftest.cpp >&5
configure:17010: $? = 0
configure:17028: result: yes
configure:17054: checking whether the g++ linker (/usr/bin/ld)
supports shared libraries
configure:17085: result: yes
configure:17152: checking dynamic linker characteristics
configure:17752: result: GNU/Linux ld.so
configure:17761: checking how to hardcode library paths into programs
configure:17786: result: immediate
configure:18312: checking if libtool supports shared libraries
configure:18314: result: yes
configure:18317: checking whether to build shared libraries
configure:18337: result: no
configure:18340: checking whether to build static libraries
configure:18344: result: yes
configure:18354: checking for fort option to produce PIC
configure:18564: result:
configure:18635: checking if fort static flag works
cc: unrecognized option `-no_ifo'
configure:18663: result: yes
configure:18673: checking if fort supports -c -o file.o
configure:18698: fort -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -assume noaccuracy_sensitive -o out/conftest2.o conftest.f
>&5
configure:18702: $? = 0
configure:18720: result: yes
configure:18746: checking whether the fort linker (/usr/bin/ld)
supports shared libraries
configure:19690: result: yes
configure:19757: checking dynamic linker characteristics
configure:20357: result: GNU/Linux ld.so
configure:20366: checking how to hardcode library paths into programs
configure:20391: result: immediate
configure:23993: checking for special C compiler options needed for
large files
configure:24041: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:24047: $? = 0
configure:24094: result: no
configure:24100: checking for _FILE_OFFSET_BITS value needed for large files
configure:24143: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:24149: $? = 0
configure:24225: result: no
configure:24376: checking for _LARGEFILE_SOURCE value needed for large files
configure:24411: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c >&5
configure:24417: $? = 0
configure:24489: result: no
configure:24526: checking for sqrt in -lm
configure:24569: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lm >&5
cc: Info: conftest.c, line 44: In this statement, the declaration for
intrinsic function "sqrt" referenced at line number 56 in file
conftest.c, the declared return type of "char" is not consistent with
the expected type of "double". It will be treated as an ordinary
external function. (intrinsicdecl)
char sqrt ();
-----^
configure:24575: $? = 0
configure:24593: result: yes
configure:25654: checking for fftw3.h
configure:25685: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
cc: Info: /home/cneale/exe/fftw-3.1.2/exec/include/fftw3.h, line 294:
In this declaration, type long double has the same representation as
type double on this platform. (longdoublenyi)
FFTW_DEFINE_API(FFTW_MANGLE_LONG_DOUBLE, long double, fftwl_complex)
^
configure:25691: $? = 0
configure:25698: result: yes
configure:25702: checking for main in -lfftw3f
configure:25739: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lfftw3f -lm >&5
configure:25745: $? = 0
configure:25763: result: yes
configure:26079: checking rpc/rpc.h usability
configure:26096: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:26102: $? = 0
configure:26116: result: yes
configure:26120: checking rpc/rpc.h presence
configure:26135: mpicc -E -I/home/cneale/exe/fftw-3.1.2/exec/include
conftest.c
configure:26141: $? = 0
configure:26155: result: yes
configure:26188: checking for rpc/rpc.h
configure:26196: result: yes
configure:26213: checking for rpc/xdr.h
configure:26237: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:26243: $? = 0
configure:26259: result: yes
configure:26271: checking for xdr_float in -lnsl
configure:26314: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lnsl -lfftw3f -lm
>&5
configure:26320: $? = 0
configure:26338: result: yes
configure:26389: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lnsl -lfftw3f -lm
>&5
cc: Warning: conftest.c, line 65: The scalar variable "xd" is fetched
but not initialized. And there may be other such fetches of this
variable that have not been reported in this compilation. (uninit1)
XDR *xd; float f; xdr_float(xd,&f);
-----------------------------^
configure:26395: $? = 0
configure:26428: checking for working memcmp
configure:26489: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lnsl -lfftw3f -lm
>&5
configure:26492: $? = 0
configure:26498: ./conftest
configure:26501: $? = 0
configure:26517: result: yes
configure:26526: checking return type of signal handlers
configure:26562: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
cc: Error: conftest.c, line 56: In this statement,
"(signal(...))(...)" has void type, but occurs in a context that
requires a non-void result. (neednonvoid)
return *(signal (0, 0)) (0) == 1;
--------^
configure:26568: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.2"
| #define PACKAGE_STRING "GROMACS 3.3.2"
| #define PACKAGE_BUGREPORT "gmx-users@gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.2"
| #define GMX_FORTRAN
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Nov 14 12:45:13 EST 2007"
| #define BUILD_USER "cneale@gw3.greatwhite.sharcnet"
| #define BUILD_MACHINE "Linux 2.4.21-3.7qsnet alpha"
| #define GMX_MPI
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## __
| #define F77_OR_C_FUNC(name,NAME) F77_FUNC(name,NAME)
| #define F77_OR_C_FUNC_(name,NAME) F77_FUNC_(name,NAME)
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define SIZEOF_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_LONG_LONG_INT 8
| #define FLOAT_FORMAT_IEEE754
| #define HAVE_DLFCN_H 1
| #define HAVE_FSEEKO 1
| #define HAVE_LIBM 1
| #define HAVE_LIBFFTW3F 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_RPC_XDR_H 1
| #define HAVE_LIBNSL 1
| /* end confdefs.h. */
| #include
| #include
|
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| int
| main ()
| {
| return *(signal (0, 0)) (0) == 1;
| ;
| return 0;
| }
configure:26583: result: void
configure:26595: checking for vprintf
configure:26659: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lnsl -lfftw3f -lm
>&5
configure:26665: $? = 0
configure:26683: result: yes
configure:26690: checking for _doprnt
configure:26754: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lnsl -lfftw3f -lm
>&5
conftest.o: In function `main':
conftest.o(.text+0x10): undefined reference to `_doprnt'
conftest.o(.text+0x14): undefined reference to `_doprnt'
conftest.o(.text+0x14): undefined reference to `_doprnt'
collect2: ld returned 1 exit status
configure:26760: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.2"
| #define PACKAGE_STRING "GROMACS 3.3.2"
| #define PACKAGE_BUGREPORT "gmx-users@gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.2"
| #define GMX_FORTRAN
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Nov 14 12:45:13 EST 2007"
| #define BUILD_USER "cneale@gw3.greatwhite.sharcnet"
| #define BUILD_MACHINE "Linux 2.4.21-3.7qsnet alpha"
| #define GMX_MPI
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## __
| #define F77_OR_C_FUNC(name,NAME) F77_FUNC(name,NAME)
| #define F77_OR_C_FUNC_(name,NAME) F77_FUNC_(name,NAME)
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define SIZEOF_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_LONG_LONG_INT 8
| #define FLOAT_FORMAT_IEEE754
| #define HAVE_DLFCN_H 1
| #define HAVE_FSEEKO 1
| #define HAVE_LIBM 1
| #define HAVE_LIBFFTW3F 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_RPC_XDR_H 1
| #define HAVE_LIBNSL 1
| #define RETSIGTYPE void
| #define HAVE_VPRINTF 1
| /* end confdefs.h. */
| /* Define _doprnt to an innocuous variant, in case
declares _doprnt.
| For example, HP-UX 11i declares gettimeofday. */
| #define _doprnt innocuous__doprnt
|
| /* System header to define __stub macros and hopefully few prototypes,
| which can conflict with char _doprnt (); below.
| Prefer to if __STDC__ is defined, since
| exists even on freestanding compilers. */
|
| #ifdef __STDC__
| # include
| #else
| # include
| #endif
|
| #undef _doprnt
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char _doprnt ();
| /* The GNU C library defines this for functions which it implements
| to always fail with ENOSYS. Some functions are actually named
| something starting with __ and the normal name is an alias. */
| #if defined __stub__doprnt || defined __stub____doprnt
| choke me
| #endif
|
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| int
| main ()
| {
| return _doprnt ();
| ;
| return 0;
| }
configure:26777: result: no
configure:26791: checking if malloc debugging is wanted
configure:26811: result: no
configure:26820: checking for strcasecmp
configure:26884: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lnsl -lfftw3f -lm
>&5
configure:26890: $? = 0
configure:26908: result: yes
configure:26922: checking for strdup
configure:26986: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lnsl -lfftw3f -lm
>&5
configure:26992: $? = 0
configure:27010: result: yes
configure:27021: checking for bool
configure:27059: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
cc: Error: conftest.c, line 79: In this declaration, "bool" appears to
be used as if it named a type, but there is no declared type of that
name visible. (typedefnotdef)
typedef bool ac__type_new_;
--------^
cc: Error: conftest.c, line 91: Invalid expression. (badexpr)
if ((ac__type_new_ *) 0)
--------------------^
cc: Error: conftest.c, line 93: In this statement, "ac__type_new_" is
not declared. (undeclared)
if (sizeof (ac__type_new_))
------------^
configure:27065: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.2"
| #define PACKAGE_STRING "GROMACS 3.3.2"
| #define PACKAGE_BUGREPORT "gmx-users@gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.2"
| #define GMX_FORTRAN
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Nov 14 12:45:13 EST 2007"
| #define BUILD_USER "cneale@gw3.greatwhite.sharcnet"
| #define BUILD_MACHINE "Linux 2.4.21-3.7qsnet alpha"
| #define GMX_MPI
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## __
| #define F77_OR_C_FUNC(name,NAME) F77_FUNC(name,NAME)
| #define F77_OR_C_FUNC_(name,NAME) F77_FUNC_(name,NAME)
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define SIZEOF_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_LONG_LONG_INT 8
| #define FLOAT_FORMAT_IEEE754
| #define HAVE_DLFCN_H 1
| #define HAVE_FSEEKO 1
| #define HAVE_LIBM 1
| #define HAVE_LIBFFTW3F 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_RPC_XDR_H 1
| #define HAVE_LIBNSL 1
| #define RETSIGTYPE void
| #define HAVE_VPRINTF 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRDUP 1
| /* end confdefs.h. */
| #include
| #ifdef HAVE_SYS_TYPES_H
| # include
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include
| #endif
| #ifdef STDC_HEADERS
| # include
| # include
| #else
| # ifdef HAVE_STDLIB_H
| # include
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include
| # endif
| # include
| #endif
| #ifdef HAVE_STRINGS_H
| # include
| #endif
| #ifdef HAVE_INTTYPES_H
| # include
| #endif
| #ifdef HAVE_STDINT_H
| # include
| #endif
| #ifdef HAVE_UNISTD_H
| # include
| #endif
| typedef bool ac__type_new_;
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| int
| main ()
| {
| if ((ac__type_new_ *) 0)
| return 0;
| if (sizeof (ac__type_new_))
| return 0;
| ;
| return 0;
| }
configure:27080: result: no
configure:27094: checking for X
configure:27209: mpicc -E -I/home/cneale/exe/fftw-3.1.2/exec/include
conftest.c
configure:27215: $? = 0
configure:27272: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lX11 -lnsl
-lfftw3f -lm >&5
/usr/bin/ld: cannot find -lX11
collect2: ld returned 1 exit status
configure:27278: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.2"
| #define PACKAGE_STRING "GROMACS 3.3.2"
| #define PACKAGE_BUGREPORT "gmx-users@gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.2"
| #define GMX_FORTRAN
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Nov 14 12:45:13 EST 2007"
| #define BUILD_USER "cneale@gw3.greatwhite.sharcnet"
| #define BUILD_MACHINE "Linux 2.4.21-3.7qsnet alpha"
| #define GMX_MPI
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## __
| #define F77_OR_C_FUNC(name,NAME) F77_FUNC(name,NAME)
| #define F77_OR_C_FUNC_(name,NAME) F77_FUNC_(name,NAME)
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define SIZEOF_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_LONG_LONG_INT 8
| #define FLOAT_FORMAT_IEEE754
| #define HAVE_DLFCN_H 1
| #define HAVE_FSEEKO 1
| #define HAVE_LIBM 1
| #define HAVE_LIBFFTW3F 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_RPC_XDR_H 1
| #define HAVE_LIBNSL 1
| #define RETSIGTYPE void
| #define HAVE_VPRINTF 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRDUP 1
| /* end confdefs.h. */
| #include
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| int
| main ()
| {
| XrmInitialize ()
| ;
| return 0;
| }
configure:27337: result: libraries /usr/X11R6/lib, headers
configure:27359: checking whether -R must be followed by a space
configure:27393: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lnsl -lfftw3f -lm
-R/usr/X11R6/lib >&5
configure:27399: $? = 0
configure:27405: result: no
configure:27522: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lnsl -lfftw3f -lm
-L/usr/X11R6/lib -R/usr/X11R6/lib -lX11 >&5
configure:27528: $? = 0
configure:27701: checking for gethostbyname
configure:27765: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lnsl -lfftw3f -lm
>&5
configure:27771: $? = 0
configure:27788: result: yes
configure:27949: checking for connect
configure:28013: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lnsl -lfftw3f -lm
>&5
configure:28019: $? = 0
configure:28036: result: yes
configure:28116: checking for remove
configure:28180: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lnsl -lfftw3f -lm
>&5
configure:28186: $? = 0
configure:28203: result: yes
configure:28283: checking for shmat
configure:28347: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lnsl -lfftw3f -lm
>&5
configure:28353: $? = 0
configure:28370: result: yes
configure:28459: checking for IceConnectionNumber in -lICE
configure:28502: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/home/cneale/exe/fftw-3.1.2/exec/lib -L/usr/X11R6/lib conftest.c
-lICE -lnsl -lfftw3f -lm >&5
configure:28508: $? = 0
configure:28526: result: yes
configure:28565: checking for Motif
configure:28617: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
cc: Severe: conftest.c, line 46: Cannot find file specified
in #include directive. (noinclfilef)
#include
-^
configure:28623: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.2"
| #define PACKAGE_STRING "GROMACS 3.3.2"
| #define PACKAGE_BUGREPORT "gmx-users@gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.2"
| #define GMX_FORTRAN
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Nov 14 12:45:13 EST 2007"
| #define BUILD_USER "cneale@gw3.greatwhite.sharcnet"
| #define BUILD_MACHINE "Linux 2.4.21-3.7qsnet alpha"
| #define GMX_MPI
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## __
| #define F77_OR_C_FUNC(name,NAME) F77_FUNC(name,NAME)
| #define F77_OR_C_FUNC_(name,NAME) F77_FUNC_(name,NAME)
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define SIZEOF_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_LONG_LONG_INT 8
| #define FLOAT_FORMAT_IEEE754
| #define HAVE_DLFCN_H 1
| #define HAVE_FSEEKO 1
| #define HAVE_LIBM 1
| #define HAVE_LIBFFTW3F 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_RPC_XDR_H 1
| #define HAVE_LIBNSL 1
| #define RETSIGTYPE void
| #define HAVE_VPRINTF 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRDUP 1
| /* end confdefs.h. */
| #include
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| int
| main ()
| {
| int a;
| ;
| return 0;
| }
configure:28720: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/usr/X11R6/lib -R/usr/X11R6/lib
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lSM -lICE -lXm
-lXt -lX11 -lnsl -lfftw3f -lm >&5
cc: Severe: conftest.c, line 46: Cannot find file specified
in #include directive. (noinclfilef)
#include
-^
configure:28726: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.2"
| #define PACKAGE_STRING "GROMACS 3.3.2"
| #define PACKAGE_BUGREPORT "gmx-users@gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.2"
| #define GMX_FORTRAN
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Nov 14 12:45:13 EST 2007"
| #define BUILD_USER "cneale@gw3.greatwhite.sharcnet"
| #define BUILD_MACHINE "Linux 2.4.21-3.7qsnet alpha"
| #define GMX_MPI
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## __
| #define F77_OR_C_FUNC(name,NAME) F77_FUNC(name,NAME)
| #define F77_OR_C_FUNC_(name,NAME) F77_FUNC_(name,NAME)
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define SIZEOF_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_LONG_LONG_INT 8
| #define FLOAT_FORMAT_IEEE754
| #define HAVE_DLFCN_H 1
| #define HAVE_FSEEKO 1
| #define HAVE_LIBM 1
| #define HAVE_LIBFFTW3F 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_RPC_XDR_H 1
| #define HAVE_LIBNSL 1
| #define RETSIGTYPE void
| #define HAVE_VPRINTF 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRDUP 1
| /* end confdefs.h. */
| #include
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| int
| main ()
| {
| XtToolkitInitialize();
| ;
| return 0;
| }
configure:28820: result: libraries /usr/X11R6/lib, headers (none)
configure:28833: checking for libXext and libXp
configure:28864: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/usr/X11R6/lib -R/usr/X11R6/lib
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lSM -lICE -lX11
-lnsl -lfftw3f -lm -lXext -lXp >&5
cc: Severe: conftest.c, line 46: Cannot find file specified
in #include directive. (noinclfilef)
#include
-^
configure:28870: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.2"
| #define PACKAGE_STRING "GROMACS 3.3.2"
| #define PACKAGE_BUGREPORT "gmx-users@gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.2"
| #define GMX_FORTRAN
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Nov 14 12:45:13 EST 2007"
| #define BUILD_USER "cneale@gw3.greatwhite.sharcnet"
| #define BUILD_MACHINE "Linux 2.4.21-3.7qsnet alpha"
| #define GMX_MPI
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## __
| #define F77_OR_C_FUNC(name,NAME) F77_FUNC(name,NAME)
| #define F77_OR_C_FUNC_(name,NAME) F77_FUNC_(name,NAME)
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define SIZEOF_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_LONG_LONG_INT 8
| #define FLOAT_FORMAT_IEEE754
| #define HAVE_DLFCN_H 1
| #define HAVE_FSEEKO 1
| #define HAVE_LIBM 1
| #define HAVE_LIBFFTW3F 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_RPC_XDR_H 1
| #define HAVE_LIBNSL 1
| #define RETSIGTYPE void
| #define HAVE_VPRINTF 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRDUP 1
| /* end confdefs.h. */
| #include
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| int
| main ()
| {
| XtToolkitInitialize();
| ;
| return 0;
| }
configure:28884: result: no
configure:28888: checking for only libXext
configure:28919: mpicc -o conftest -std1 -fast -O4 -no_ifo -arch ev6
-unroll 2 -fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include
-L/usr/X11R6/lib -R/usr/X11R6/lib
-L/home/cneale/exe/fftw-3.1.2/exec/lib conftest.c -lSM -lICE -lX11
-lnsl -lfftw3f -lm -lXext >&5
cc: Severe: conftest.c, line 46: Cannot find file specified
in #include directive. (noinclfilef)
#include
-^
configure:28925: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "GROMACS"
| #define PACKAGE_TARNAME "gromacs"
| #define PACKAGE_VERSION "3.3.2"
| #define PACKAGE_STRING "GROMACS 3.3.2"
| #define PACKAGE_BUGREPORT "gmx-users@gromacs.org"
| #define PACKAGE "gromacs"
| #define VERSION "3.3.2"
| #define GMX_FORTRAN
| #define GMX_SOFTWARE_SQRT
| #define GMX_QMMM_GAUSSIAN
| #define BUILD_TIME "Wed Nov 14 12:45:13 EST 2007"
| #define BUILD_USER "cneale@gw3.greatwhite.sharcnet"
| #define BUILD_MACHINE "Linux 2.4.21-3.7qsnet alpha"
| #define GMX_MPI
| #define F77_FUNC(name,NAME) name ## _
| #define F77_FUNC_(name,NAME) name ## __
| #define F77_OR_C_FUNC(name,NAME) F77_FUNC(name,NAME)
| #define F77_OR_C_FUNC_(name,NAME) F77_FUNC_(name,NAME)
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define SIZEOF_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_LONG_LONG_INT 8
| #define FLOAT_FORMAT_IEEE754
| #define HAVE_DLFCN_H 1
| #define HAVE_FSEEKO 1
| #define HAVE_LIBM 1
| #define HAVE_LIBFFTW3F 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_RPC_XDR_H 1
| #define HAVE_LIBNSL 1
| #define RETSIGTYPE void
| #define HAVE_VPRINTF 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRDUP 1
| /* end confdefs.h. */
| #include
| #ifdef F77_DUMMY_MAIN
|
| # ifdef __cplusplus
| extern "C"
| # endif
| int F77_DUMMY_MAIN() { return 1; }
|
| #endif
| int
| main ()
| {
| XtToolkitInitialize();
| ;
| return 0;
| }
configure:28938: result: no
configure:28960: Both libraries and includes are needed for Motif - disabling.
configure:29571: checking limits.h usability
configure:29588: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:29594: $? = 0
configure:29608: result: yes
configure:29612: checking limits.h presence
configure:29627: mpicc -E -I/home/cneale/exe/fftw-3.1.2/exec/include
conftest.c
configure:29633: $? = 0
configure:29647: result: yes
configure:29680: checking for limits.h
configure:29688: result: yes
configure:29561: checking for strings.h
configure:29567: result: yes
configure:29561: checking for unistd.h
configure:29567: result: yes
configure:29710: checking for unistd.h
configure:29716: result: yes
configure:29853: checking for an ANSI C-conforming const
configure:29936: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
cc: Warning: conftest.c, line 87: The scalar variable "t" is fetched
but not initialized. And there may be other such fetches of this
variable that have not been reported in this compilation. (uninit1)
*t++ = 0;
-----^
cc: Warning: conftest.c, line 103: The scalar variable "b" is fetched
but not initialized. And there may be other such fetches of this
variable that have not been reported in this compilation. (uninit1)
struct s *b; b->j = 5;
-----------------^
configure:29942: $? = 0
configure:29957: result: yes
configure:29967: checking for size_t
configure:30005: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:30011: $? = 0
configure:30026: result: yes
configure:30038: checking whether struct tm is in sys/time.h or time.h
configure:30076: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
configure:30082: $? = 0
configure:30097: result: time.h
configure:30107: checking for uid_t in sys/types.h
configure:30130: result: yes
configure:30145: checking for inline
configure:30171: mpicc -c -std1 -fast -O4 -no_ifo -arch ev6 -unroll 2
-fp_reorder -I/home/cneale/exe/fftw-3.1.2/exec/include conftest.c >&5
cc: Info: conftest.c, line 53: The inline and __inline keywords will
be interpreted with GCC style semantics. To get C99 semantics, please
specify -accept nogccinline. (gccinline)
inline foo_t foo () {return 0; }
-------------^
configure:30177: $? = 0
configure:30195: result: inline
configure:30770: checking whether byte ordering is bigendian
configure:31018: result: no
configure:31559: creating ./config.status
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by GROMACS config.status 3.3.2, which was
generated by GNU Autoconf 2.61. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status
on gw3.greatwhite.sharcnet
config.status:757: creating Makefile
config.status:757: creating src/Makefile
config.status:757: creating src/gmxlib/Makefile
config.status:757: creating src/gmxlib/gmx_blas/Makefile
config.status:757: creating src/gmxlib/gmx_lapack/Makefile
config.status:757: creating src/gmxlib/nonbonded/Makefile
config.status:757: creating src/gmxlib/nonbonded/nb_kernel/Makefile
config.status:757: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile
config.status:757: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile
config.status:757: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile
config.status:757: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile
config.status:757: creating
src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile
config.status:757: creating
src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile
config.status:757: creating
src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile
config.status:757: creating
src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile
config.status:757: creating include/Makefile
config.status:757: creating include/types/Makefile
config.status:757: creating src/mdlib/Makefile
config.status:757: creating src/kernel/Makefile
config.status:757: creating src/tools/Makefile
config.status:757: creating src/ngmx/Makefile
config.status:757: creating src/contrib/Makefile
config.status:757: creating scripts/Makefile
config.status:757: creating admin/Makefile
config.status:757: creating share/Makefile
config.status:757: creating share/tutor/Makefile
config.status:757: creating share/tutor/gmxdemo/Makefile
config.status:757: creating share/tutor/nmr1/Makefile
config.status:757: creating share/tutor/nmr2/Makefile
config.status:757: creating share/tutor/water/Makefile
config.status:757: creating share/tutor/mixed/Makefile
config.status:757: creating share/tutor/methanol/Makefile
config.status:757: creating share/tutor/speptide/Makefile
config.status:757: creating share/template/Makefile
config.status:757: creating share/top/Makefile
config.status:757: creating share/html/Makefile
config.status:757: creating share/html/images/Makefile
config.status:757: creating share/html/online/Makefile
config.status:757: creating man/Makefile
config.status:757: creating man/man1/Makefile
config.status:757: creating src/config.h
config.status:1058: executing depfiles commands
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=alphaev6-unknown-linux-gnu
ac_cv_c_bigendian=no
ac_cv_c_compiler_gnu=no
ac_cv_c_const=yes
ac_cv_c_inline=inline
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCASFLAGS_set=
ac_cv_env_CCASFLAGS_value=
ac_cv_env_CCAS_set=
ac_cv_env_CCAS_value=
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=set
ac_cv_env_CPPFLAGS_value=-I/home/cneale/exe/fftw-3.1.2/exec/include
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value=-L/home/cneale/exe/fftw-3.1.2/exec/lib
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_XMKMF_set=
ac_cv_env_XMKMF_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_f77_compiler_gnu=no
ac_cv_f77_dummy_main=none
ac_cv_f77_libs=$' -L/home/cneale/exe/fftw-3.1.2/exec/lib -lUfor -lfor
-lFutil -lcpml -lots -L/usr/lib/gcc-lib/alpha-redhat-linux/2.96
-L/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../..'
ac_cv_f77_mangling=$'lower case, underscore, extra underscore'
ac_cv_fortran_dummy_main=none
ac_cv_func__doprnt=no
ac_cv_func_connect=yes
ac_cv_func_gethostbyname=yes
ac_cv_func_memcmp_working=yes
ac_cv_func_remove=yes
ac_cv_func_shmat=yes
ac_cv_func_strcasecmp=yes
ac_cv_func_strdup=yes
ac_cv_func_vprintf=yes
ac_cv_have_x=$'have_x=yes\tac_x_includes=\'\'\tac_x_libraries=\'/usr/X11R6/lib\''
ac_cv_header_dlfcn_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_limits_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_rpc_rpc_h=yes
ac_cv_header_rpc_xdr_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=alphaev6-unknown-linux-gnu
ac_cv_lib_ICE_IceConnectionNumber=yes
ac_cv_lib_fftw3f_main=yes
ac_cv_lib_m_sqrt=yes
ac_cv_lib_nsl_xdr_float=yes
ac_cv_motif_includes=no
ac_cv_motif_libraries=/usr/X11R6/lib
ac_cv_objext=o
ac_cv_path_EGREP=$'/bin/grep -E'
ac_cv_path_GREP=/bin/grep
ac_cv_path_install=$'/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP=$'mpicc -E'
ac_cv_prog_CXXCPP=$'g++ -E'
ac_cv_prog_MPICC=mpicc
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_CC=ccc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_F77=fort
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_f77_g=yes
ac_cv_prog_f77_v=-v
ac_cv_prog_make_make_set=yes
ac_cv_sizeof_int=4
ac_cv_sizeof_long_int=8
ac_cv_sizeof_long_long_int=8
ac_cv_struct_tm=time.h
ac_cv_sys_file_offset_bits=no
ac_cv_sys_largefile_CC=no
ac_cv_sys_largefile_source=no
ac_cv_type_bool=no
ac_cv_type_int=yes
ac_cv_type_long_int=yes
ac_cv_type_long_long_int=yes
ac_cv_type_signal=void
ac_cv_type_size_t=yes
ac_cv_type_uid_t=yes
am_cv_CCAS_dependencies_compiler_type=none
am_cv_CC_dependencies_compiler_type=none
am_cv_CXX_dependencies_compiler_type=gcc
am_cv_prog_tar_ustar=pax
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd=$'$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_LDCXX=/usr/bin/ld
lt_cv_path_NM=$'/usr/bin/nm -B'
lt_cv_path_SED=/bin/sed
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_c_o_F77=yes
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sys_global_symbol_pipe=$'sed -n -e \'s/^.*[
\t]\\([ABCDGIRSTW][ABCDGIRSTW]*\\)[ \t][
\t]*\\([_A-Za-z][_A-Za-z0-9]*\\)$/\\1 \\2 \\2/p\''
lt_cv_sys_global_symbol_to_c_name_address=$'sed -n -e \'s/^: \\([^
]*\\) $/ {\\"\\1\\", (lt_ptr) 0},/p\' -e \'s/^[BCDEGRST] \\([^ ]*\\)
\\([^ ]*\\)$/ {"\\2", (lt_ptr) \\&\\2},/p\''
lt_cv_sys_global_symbol_to_cdecl=$'sed -n -e \'s/^. .*
\\(.*\\)$/extern int \\1;/p\''
lt_cv_sys_max_cmd_len=65536
lt_lt_cv_prog_compiler_c_o=$'"yes"'
lt_lt_cv_prog_compiler_c_o_CXX=$'"yes"'
lt_lt_cv_prog_compiler_c_o_F77=$'"yes"'
lt_lt_cv_sys_global_symbol_pipe=$'"sed -n -e \'s/^.*[
\t]\\\\([ABCDGIRSTW][ABCDGIRSTW]*\\\\)[ \t][
\t]*\\\\([_A-Za-z][_A-Za-z0-9]*\\\\)\\$/\\\\1 \\\\2 \\\\2/p\'"'
lt_lt_cv_sys_global_symbol_to_c_name_address=$'"sed -n -e \'s/^:
\\\\([^ ]*\\\\) \\$/ {\\\\\\"\\\\1\\\\\\", (lt_ptr) 0},/p\' -e
\'s/^[BCDEGRST] \\\\([^ ]*\\\\) \\\\([^ ]*\\\\)\\$/ {\\"\\\\2\\",
(lt_ptr) \\\\&\\\\2},/p\'"'
lt_lt_cv_sys_global_symbol_to_cdecl=$'"sed -n -e \'s/^. .*
\\\\(.*\\\\)\\$/extern int \\\\1;/p\'"'
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL} /scratch/cneale/exe/gromacs-3.3.2/config/missing
--run aclocal-1.10'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} /scratch/cneale/exe/gromacs-3.3.2/config/missing --run tar'
AR='ar'
AS='mpicc'
ASFLAGS='-O4 -no_ifo -arch ev6'
AUTOCONF='${SHELL} /scratch/cneale/exe/gromacs-3.3.2/config/missing
--run autoconf'
AUTOHEADER='${SHELL} /scratch/cneale/exe/gromacs-3.3.2/config/missing
--run autoheader'
AUTOMAKE='${SHELL} /scratch/cneale/exe/gromacs-3.3.2/config/missing
--run automake-1.10'
AWK='gawk'
CC='mpicc'
CCAS='mpicc'
CCASDEPMODE='depmode=none'
CCASFLAGS='-std1 -fast -O4 -no_ifo -arch ev6 -unroll 2 -fp_reorder'
CCDEPMODE='depmode=none'
CC_FOR_BUILD='ccc'
CFLAGS='-std1 -fast -O4 -no_ifo -arch ev6 -unroll 2 -fp_reorder'
CPP='mpicc -E'
CPPFLAGS='-I/home/cneale/exe/fftw-3.1.2/exec/include'
CXX='g++'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc'
CXXFLAGS='-g -O2'
CYGPATH_W='echo'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
DLLTOOL='dlltool'
ECHO='echo'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
EXEEXT=''
F77='fort'
F77LINK='$(LINK)'
FFLAGS='-std1 -fast -O4 -no_ifo -arch ev6 -unroll 2 -fp_reorder
-assume noaccuracy_sensitive'
FLIBS=' -L/home/cneale/exe/fftw-3.1.2/exec/lib -lUfor -lfor -lFutil
-lcpml -lots -L/usr/lib/gcc-lib/alpha-redhat-linux/2.96
-L/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../..'
GMXANA_LIBOBJS=''
GMXLIB_LIBOBJS=''
GMX_DOUBLE_FALSE=''
GMX_DOUBLE_TRUE='#'
GMX_EXTERNAL_BLAS_FALSE=''
GMX_EXTERNAL_BLAS_TRUE='#'
GMX_EXTERNAL_LAPACK_FALSE=''
GMX_EXTERNAL_LAPACK_TRUE='#'
GMX_FORTRAN_FALSE='#'
GMX_FORTRAN_TRUE=''
GMX_IA32_3DNOW_FALSE=''
GMX_IA32_3DNOW_TRUE='#'
GMX_IA32_SSE2_FALSE=''
GMX_IA32_SSE2_TRUE='#'
GMX_IA32_SSE_FALSE=''
GMX_IA32_SSE_TRUE='#'
GMX_IA64_ASM_DOUBLE_FALSE=''
GMX_IA64_ASM_DOUBLE_TRUE='#'
GMX_IA64_ASM_SINGLE_FALSE=''
GMX_IA64_ASM_SINGLE_TRUE='#'
GMX_PPC_ALTIVEC_FALSE=''
GMX_PPC_ALTIVEC_TRUE='#'
GMX_PREFETCH_FORCES_FALSE=''
GMX_PREFETCH_FORCES_TRUE='#'
GMX_SOFTWARE_SQRT_FALSE='#'
GMX_SOFTWARE_SQRT_TRUE=''
GMX_THREAD_FALSE=''
GMX_THREAD_TRUE='#'
GMX_X86_64_SSE2_FALSE=''
GMX_X86_64_SSE2_TRUE='#'
GMX_X86_64_SSE_FALSE=''
GMX_X86_64_SSE_TRUE='#'
GREP='/bin/grep'
INCLUDES=' '
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LDFLAGS='-L/home/cneale/exe/fftw-3.1.2/exec/lib '
LIBOBJS=''
LIBS=' -L/usr/X11R6/lib -R/usr/X11R6/lib -lnsl -lfftw3f -lm -lSM
-lICE -lX11 -L/home/cneale/exe/fftw-3.1.2/exec/lib -lUfor -lfor
-lFutil -lcpml -lots -L/usr/lib/gcc-lib/alpha-redhat-linux/2.96
-L/usr/lib/gcc-lib/alpha-redhat-linux/2.96/../../..'
LIBSUFFIX='_mpi'
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LN_S='ln -s'
LTLIBOBJS=''
MAKEINFO='${SHELL} /scratch/cneale/exe/gromacs-3.3.2/config/missing
--run makeinfo'
MDLIB_LIBOBJS=' qm_gaussian.lo gmx_fft_fftw3.lo'
MPICC='mpicc'
OBJDUMP='objdump'
OBJEXT='o'
PACKAGE='gromacs'
PACKAGE_BUGREPORT='gmx-users@gromacs.org'
PACKAGE_NAME='GROMACS'
PACKAGE_STRING='GROMACS 3.3.2'
PACKAGE_TARNAME='gromacs'
PACKAGE_VERSION='3.3.2'
PATH_SEPARATOR=':'
RANLIB='ranlib'
RPM='rpm'
SET_MAKE=''
SHARED_VERSION_INFO='4:0:0'
SHELL='/bin/sh'
STRIP='strip'
USE_X11_FALSE='#'
USE_X11_TRUE=''
VERSION='3.3.2'
XMKMF=''
X_CFLAGS=''
X_EXTRA_LIBS=''
X_LIBS=' -L/usr/X11R6/lib -R/usr/X11R6/lib'
X_PRE_LIBS=' -lSM -lICE'
ac_ct_CC='ccc'
ac_ct_CXX='g++'
ac_ct_F77='fort'
am__fastdepCCAS_FALSE=''
am__fastdepCCAS_TRUE='#'
am__fastdepCC_FALSE=''
am__fastdepCC_TRUE='#'
am__fastdepCXX_FALSE=''
am__fastdepCXX_TRUE='#'
am__include='include'
am__isrc=''
am__leading_dot='.'
am__quote=''
am__tar='pax -L -x ustar -w "$$tardir"'
am__untar='pax -r'
bindir='${exec_prefix}/bin'
build='alphaev6-unknown-linux-gnu'
build_alias=''
build_cpu='alphaev6'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='alphaev6-unknown-linux-gnu'
host_alias=''
host_cpu='alphaev6'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='$(SHELL) /scratch/cneale/exe/gromacs-3.3.2/config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/bin/mkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/scratch/cneale/exe/gromacs-3.3.2/exec'
program_transform_name='s&$$&_mpi&'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
#define PACKAGE_NAME "GROMACS"
#define PACKAGE_TARNAME "gromacs"
#define PACKAGE_VERSION "3.3.2"
#define PACKAGE_STRING "GROMACS 3.3.2"
#define PACKAGE_BUGREPORT "gmx-users@gromacs.org"
#define PACKAGE "gromacs"
#define VERSION "3.3.2"
#define GMX_FORTRAN
#define GMX_SOFTWARE_SQRT
#define GMX_QMMM_GAUSSIAN
#define BUILD_TIME "Wed Nov 14 12:45:13 EST 2007"
#define BUILD_USER "cneale@gw3.greatwhite.sharcnet"
#define BUILD_MACHINE "Linux 2.4.21-3.7qsnet alpha"
#define GMX_MPI
#define F77_FUNC(name,NAME) name ## _
#define F77_FUNC_(name,NAME) name ## __
#define F77_OR_C_FUNC(name,NAME) F77_FUNC(name,NAME)
#define F77_OR_C_FUNC_(name,NAME) F77_FUNC_(name,NAME)
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define SIZEOF_INT 4
#define SIZEOF_LONG_INT 8
#define SIZEOF_LONG_LONG_INT 8
#define FLOAT_FORMAT_IEEE754
#define HAVE_DLFCN_H 1
#define HAVE_FSEEKO 1
#define HAVE_LIBM 1
#define HAVE_LIBFFTW3F 1
#define HAVE_RPC_RPC_H 1
#define HAVE_RPC_XDR_H 1
#define HAVE_LIBNSL 1
#define RETSIGTYPE void
#define HAVE_VPRINTF 1
#define HAVE_STRCASECMP 1
#define HAVE_STRDUP 1
#define HAVE_LIMITS_H 1
#define HAVE_STRINGS_H 1
#define HAVE_UNISTD_H 1
#define HAVE_UNISTD_H 1
configure: exit 0